Publications

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Petzold L, Sturrock M, Chaplain MAJ, Aldakheel S, Hellander A.  2014.  The Role of Dimerisation and Nuclear Transport in the Hes1 Gene Regulatory Network. BULLETIN OF MATHEMATICAL BIOLOGY. 76:766-798.
Petzold L., Buoni M..  2009.  An algorithm for simulation of electrochemical systems with surface-bulk coupling strategies. :296-302.
Petzold L, Cao Y.  2006.  Accuracy limitations and the measurement of errors in the stochastic simulation of chemically reacting systems. JOURNAL OF COMPUTATIONAL PHYSICS. 212:6-24.
Petzold L, Bhattacharjee K.  2014.  Probabilistic User-Level Opinion Detection on Online Social Networks. Lecture Notes in Computer Science. 8851:309-325.
Petzold L, Cao Y.  2003.  A subspace error estimate or linear systems. SIAM JOURNAL ON MATRIX ANALYSIS AND APPLICATIONS. 24:787-801.
Petzold L, Cao Y.  2004.  A posteriori error estimation and global error control for ordinary differential equations by the adjoint method. SIAM JOURNAL ON SCIENTIFIC COMPUTING. 26:359-374.
Petzold L, Li ST.  2000.  Software and algorithms for sensitivity analysis of large-scale differential algebraic systems. JOURNAL OF COMPUTATIONAL AND APPLIED MATHEMATICS. 125:131-145.
Petzold L, Bales B, Pollock T.  2017.  Segmentation-free image processing and analysis of precipitate shapes in 2D and 3D. MODELLING AND SIMULATION IN MATERIALS SCIENCE AND ENGINEERING. 25
Petzold L, Zheng Z.  2006.  Runge-Kutta-Chebyshev projection method. JOURNAL OF COMPUTATIONAL PHYSICS. 219:976-991.
Petzold L, Li H, Moehlis J, Kolpas A.  2009.  Parallel simulation for a fish schooling model on a general-purpose graphics processing unit. CONCURRENCY AND COMPUTATION-PRACTICE & EXPERIENCE. 21:725-737.
Petzold L, Krintz C.  2012.  Stochastic Simulation Service: Towards an Integrated Development Environment for Modeling and Simulation of Stochastic Biochemical Systems. :2303-2324.
Petzold L, Meinhart C, Zhu LD, Tretheway D.  2005.  Simulation of fluid slip at 3D hydrophobic microchannel walls by the lattice Boltzmann method. JOURNAL OF COMPUTATIONAL PHYSICS. 202:181-195.
Petzold L, Meinhart CD, Mezic I, Zhang YT, Chen H, MacDonald NC.  2004.  SOI processing of a ring electrokinetic chaotic micromixer. :292-295.
Petzold L, Gunawan R, Doyle FJ, Cao Y.  2005.  Sensitivity analysis of discrete stochastic systems. BIOPHYSICAL JOURNAL. 88:2530-2540.
Petzold L, Robinson ASkaja, Doyle, III FJ, Raden D, Hildebrandt S.  2008.  A top-down approach to mechanistic biological modeling: Application to the single-chain antibody folding pathway. BIOPHYSICAL JOURNAL. 95:3535-3558.
Petzold L, Zhu WJ.  1999.  Parallel sensitivity analysis for DAEs with many parameters. CONCURRENCY-PRACTICE AND EXPERIENCE. 11:571-585.
Petzold L, Zhang Y, Jiang R.  2017.  Survival Topic Models for Predicting Outcomes for Trauma Patients. IEEE International Conference on Data Engineering. :1497-1504.
Petzold L, Doyle, III F, Webb ABrooke, Herzog E, Taylor S.  2011.  The origins and consequences of heterogeneous neurons in a molecular oscillator model of the mammalian circadian clock. 25
Petzold LR, Lampoudi S, Hulbert RR, Cotter PA, Williams CL.  2006.  The development of a model of a bacterial phosphorelay signal transduction system. :66-66.
Petzold L, Buoni M.  2010.  An algorithm for simulation of electrochemical systems with surface-bulk coupling strategies. JOURNAL OF COMPUTATIONAL PHYSICS. 229:379-398.
Petzold L, Cao Y.  2004.  An error estimate for matrix equations. APPLIED NUMERICAL MATHEMATICS. 50:395-407.
Petzold L, Drawert B, Trogdon M, Hellander S, Yi T-M.  2016.  A framework for discrete stochastic simulation on 3D moving boundary domains. JOURNAL OF CHEMICAL PHYSICS. 145
Petzold L, Li ST, Cao Y.  2002.  Adjoint sensitivity analysis for differential-algebraic equations: algorithms and software. JOURNAL OF COMPUTATIONAL AND APPLIED MATHEMATICS. 149:171-191.
Petzold L, Bhattacharjee K.  2015.  Detecting Opinions in a Temporally Evolving Conversation on Twitter. Lecture Notes in Computer Science. 9471:82-97.
Petzold L, Drawert B, Khammash M, Lawson MJ.  2010.  The diffusive finite state projection algorithm for efficient simulation of the stochastic reaction-diffusion master equation. JOURNAL OF CHEMICAL PHYSICS. 132

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