Publications

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Doyle FJ, Immanuel CD.  2003.  Hierarchical multiobjective strategy for particle-size distribution control. AICHE JOURNAL. 49:2383-2399.
Doyle, III FJ, Herzog ED, Welsh DK, Petzold LR, Harang R, Meeker K, Bonnet G, Webb AB.  2011.  Wavelet Measurement Suggests Cause of Period Instability in Mammalian Circadian Neurons. JOURNAL OF BIOLOGICAL RHYTHMS. 26:353-362.
Doyle FJ, Castro JJ.  2004.  A pulp mill benchmark problem for control: problem description. JOURNAL OF PROCESS CONTROL. 14:17-29.
Doyle FJ, Dhurjati PS, Dufour P, Bhartiya S.  2005.  Neural network-based software sensor: Training set design and application to a continuous pulp digester. CONTROL ENGINEERING PRACTICE. 13:135-143.
Doyle, III FJ, Herzog ED, Tsai CA, Granados-Fuentes D, Mazuski C, Harang R, Petzold LR, Meeker K, Kim J, An S.  2013.  A neuropeptide speeds circadian entrainment by reducing intercellular synchrony. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 110:E4355-E4361.
Doyle FJ, Zak DE, Stelling J.  2005.  Sensitivity analysis of oscillatory (bio)chemical systems. COMPUTERS & CHEMICAL ENGINEERING. 29:663-673.
Doyle, III FJ, Hori Y, Wang Y, Hara S.  2015.  Collective Oscillation Period of Inter-Coupled Biological Negative Cyclic Feedback Oscillators. IEEE TRANSACTIONS ON AUTOMATIC CONTROL. 60:1392-1397.
Doyle, III FJ, Pinsker JE, Dassau E, Dasanayake IS, Seborg DE.  2015.  Empirical Dynamic Model Identification for Blood-Glucose Dynamics in Response to Physical Activity. :3834-3839.
Doyle, III FJ, Rodriguez-Fernandez M, Timmer J, Klett H, Leon LR, Dineen S.  2015.  Modeling the inflammatory response in the hypothalamus ensuing heat stroke: Iterative cycle of model calibration, identifiability analysis, experimental design and data collection. MATHEMATICAL BIOSCIENCES. 260:35-46.
Doyle FJ, Schwaber JS, Zak DE, Gonye GE.  2003.  Importance of input perturbations and stochastic gene expression in the reverse engineering of genetic regulatory networks: Insights from an identifiability analysis of an in silico network. GENOME RESEARCH. 13:2396-2405.
Doyle, III FJ, B. Bequette W, Dassau E, Wilson DM, Buckingham BA, H. Chase P, Zisser H, Lee H, Jovanovic L, Cameron F.  2010.  Real-Time Hypoglycemia Prediction Suite Using Continuous Glucose Monitoring A safety net for the artificial pancreas. DIABETES CARE. 33:1249-1254.
Doyle FJ, Hernjak N.  2005.  Glucose control design using nonlinearity assessment techniques. AICHE JOURNAL. 51:544-554.
Doyle FJ, Xu P, Robinson AS, Bell E, Hildebrandt S, Raden D.  2005.  Analysis of cellular response to protein overexpression. IEE PROCEEDINGS SYSTEMS BIOLOGY. 152:285-289.
Doyle FJ, Gilles ED, Stelling J.  2004.  Robustness properties of circadian clock architectures. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 101:13210-13215.
Doyle FJ, Saffer DR.  2004.  Analysis of linear programming in model predictive control. COMPUTERS & CHEMICAL ENGINEERING. 28:2749-2763.
Doyle FJ, Cordeiro CF, Sundaram SS, Immanuel CD.  2003.  Population balance PSD model for emulsion polymerization with steric stabilizers. AICHE JOURNAL. 49:1392-1404.
Doyle FJ, Robinson AS, Raden D, Xu P.  2005.  Analysis of unfolded protein response during single-chain antibody expression in Saccaromyces cerevisiae reveals different roles for BiP and PDI in folding. METABOLIC ENGINEERING. 7:269-279.
Doyle, III FJ, Litster JD, Cameron IT, Immanuel CD, Poon JM-H, Ramachandran R, Glaser T, Wang F.Y, Sanders CFW.  2009.  Model predictive control of continuous drum granulation. JOURNAL OF PROCESS CONTROL. 19:615-622.
Doyle, III FJ, Shoemaker JE, Gunawan R, Mirsky H, Stelling J, Taylor SR, Bagheri N, Kwei E.  2009.  Automatic Control in Systems Biology. SPRINGER HANDBOOK OF AUTOMATION. :1335-1360.
Doyle, III FJ, Mensh BD, Burnett DR, Huyett LM, Zisser HC.  2014.  Glucose Sensing in the Peritoneal Space Offers Faster Kinetics Than Sensing in the Subcutaneous Space. DIABETES. 63:2498-2505.
Doyle, III FJ, Zisser H, Dassau E, Campos-Cornejo F, Jovanovic L, Campos-Delgado DU, Espinoza-Trejo D.  2010.  An Advisory Protocol for Rapid- and Slow-Acting Insulin Therapy Based on a Run-to-Run Methodology. DIABETES TECHNOLOGY & THERAPEUTICS. 12:555-565.
Doyle, III FJ, Pinsker JE, Forlenza GP, Ly TT, Reuschel-DiVirgilio S, Maahs DM, Gondhalekar R, Dassau E, R. Wadwa P, Messer LH et al..  2017.  Outpatient Closed-Loop Control with Unannounced Moderate Exercise in Adolescents Using Zone Model Predictive Control. DIABETES TECHNOLOGY & THERAPEUTICS. 19:331-339.
Doyle, III FJ, B. Bequette W, Forlenza GP, Ly TT, Howsmon DP, Pinsker JE, Mauritzen E, Cameron F, Dassau E, Deshpande S et al..  2017.  Application of Zone Model Predictive Control Artificial Pancreas During Extended Use of Infusion Set and Sensor: A Randomized Crossover-Controlled Home-Use Trial. DIABETES CARE. 40:1096-1102.
Doyle, III FJ, Magrofuoco E, Elvassore N.  2012.  Theoretical analysis of insulin-dependent glucose uptake heterogeneity in 3D bioreactor cell culture. BIOTECHNOLOGY PROGRESS. 28:833-845.
Doyle, III FJ, Pinto MA, Immanuel CD.  2008.  A two-level discretisation algorithm for the efficient solution of higher-dimensional population balance models. CHEMICAL ENGINEERING SCIENCE. 63:1304-1314.

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