Publications
Found 200 results
[ Author] Title Type Year Filters: First Letter Of Last Name is P [Clear All Filters]
Automatic identification of model reductions for discrete stochastic simulation. JOURNAL OF CHEMICAL PHYSICS. 137
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2012. Survival Topic Models for Predicting Outcomes for Trauma Patients. IEEE International Conference on Data Engineering. :1497-1504.
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2017. Reaction rates for a generalized reaction-diffusion master equation. PHYSICAL REVIEW E. 93
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2016. A posteriori error estimation and global error control for ordinary differential equations by the adjoint method. SIAM JOURNAL ON SCIENTIFIC COMPUTING. 26:359-374.
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2004. The Role of Dimerisation and Nuclear Transport in the Hes1 Gene Regulatory Network. BULLETIN OF MATHEMATICAL BIOLOGY. 76:766-798.
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2014. An algorithm for simulation of electrochemical systems with surface-bulk coupling strategies. JOURNAL OF COMPUTATIONAL PHYSICS. 229:379-398.
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2010. Runge-Kutta-Chebyshev projection method. JOURNAL OF COMPUTATIONAL PHYSICS. 219:976-991.
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2006. What Drives Consumer Choices? Mining Aspects and Opinions on Large Scale Review Data using Distributed Representation of Words International Conference on Data Mining Workshops. :908-915.
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2016. Multiscale stochastic simulation algorithm with stochastic partial equilibrium assumption for chemically reacting systems. JOURNAL OF COMPUTATIONAL PHYSICS. 206:395-411.
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2005. Accuracy limitations and the measurement of errors in the stochastic simulation of chemically reacting systems. JOURNAL OF COMPUTATIONAL PHYSICS. 212:6-24.
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2006. Probabilistic User-Level Opinion Detection on Online Social Networks. Lecture Notes in Computer Science. 8851:309-325.
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2014. An algorithm for simulation of electrochemical systems with surface-bulk coupling strategies. :296-302.
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2004. Sensitivity analysis of discrete stochastic systems. BIOPHYSICAL JOURNAL. 88:2530-2540.
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2005. A top-down approach to mechanistic biological modeling: Application to the single-chain antibody folding pathway. BIOPHYSICAL JOURNAL. 95:3535-3558.
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2011. EFFICIENT PARALLELIZATION OF THE STOCHASTIC SIMULATION ALGORITHM FOR CHEMICALLY REACTING SYSTEMS ON THE GRAPHICS PROCESSING UNIT. INTERNATIONAL JOURNAL OF HIGH PERFORMANCE COMPUTING APPLICATIONS. 24:107-116.
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2010. Adjoint sensitivity analysis for differential-algebraic equations: algorithms and software. JOURNAL OF COMPUTATIONAL AND APPLIED MATHEMATICS. 149:171-191.
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2002. Segmentation-free image processing and analysis of precipitate shapes in 2D and 3D. MODELLING AND SIMULATION IN MATERIALS SCIENCE AND ENGINEERING. 25
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2017. The diffusive finite state projection algorithm for efficient simulation of the stochastic reaction-diffusion master equation. JOURNAL OF CHEMICAL PHYSICS. 132
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2010. Spatial Stochastic Dynamics Enable Robust Cell Polarization. PLOS COMPUTATIONAL BIOLOGY. 9
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2013. Reaction rates for reaction-diffusion kinetics on unstructured meshes. JOURNAL OF CHEMICAL PHYSICS. 146
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2006. Parallel sensitivity analysis for DAEs with many parameters. CONCURRENCY-PRACTICE AND EXPERIENCE. 11:571-585.
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