Publications

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Petzold L, Fu J, Li H, Wu S.  2012.  Automatic identification of model reductions for discrete stochastic simulation. JOURNAL OF CHEMICAL PHYSICS. 137
Petzold L, Zhang Y, Jiang R.  2017.  Survival Topic Models for Predicting Outcomes for Trauma Patients. IEEE International Conference on Data Engineering. :1497-1504.
Petzold L, Hellander S.  2016.  Reaction rates for a generalized reaction-diffusion master equation. PHYSICAL REVIEW E. 93
Petzold L, Cao Y.  2004.  A posteriori error estimation and global error control for ordinary differential equations by the adjoint method. SIAM JOURNAL ON SCIENTIFIC COMPUTING. 26:359-374.
Petzold L, Sturrock M, Chaplain MAJ, Aldakheel S, Hellander A.  2014.  The Role of Dimerisation and Nuclear Transport in the Hes1 Gene Regulatory Network. BULLETIN OF MATHEMATICAL BIOLOGY. 76:766-798.
Petzold L, Buoni M.  2010.  An algorithm for simulation of electrochemical systems with surface-bulk coupling strategies. JOURNAL OF COMPUTATIONAL PHYSICS. 229:379-398.
Petzold L, Zheng Z.  2006.  Runge-Kutta-Chebyshev projection method. JOURNAL OF COMPUTATIONAL PHYSICS. 219:976-991.
Petzold L, Bhattacharjee K.  2016.  What Drives Consumer Choices? Mining Aspects and Opinions on Large Scale Review Data using Distributed Representation of Words International Conference on Data Mining Workshops. :908-915.
Petzold L, Gillespie D, Cao Y.  2005.  Multiscale stochastic simulation algorithm with stochastic partial equilibrium assumption for chemically reacting systems. JOURNAL OF COMPUTATIONAL PHYSICS. 206:395-411.
Petzold L, Cao Y.  2006.  Accuracy limitations and the measurement of errors in the stochastic simulation of chemically reacting systems. JOURNAL OF COMPUTATIONAL PHYSICS. 212:6-24.
Petzold L, Bhattacharjee K.  2014.  Probabilistic User-Level Opinion Detection on Online Social Networks. Lecture Notes in Computer Science. 8851:309-325.
Petzold L., Buoni M..  2009.  An algorithm for simulation of electrochemical systems with surface-bulk coupling strategies. :296-302.
Petzold L, Meinhart CD, Mezic I, Zhang YT, Chen H, MacDonald NC.  2004.  SOI processing of a ring electrokinetic chaotic micromixer. :292-295.
Petzold L, Gunawan R, Doyle FJ, Cao Y.  2005.  Sensitivity analysis of discrete stochastic systems. BIOPHYSICAL JOURNAL. 88:2530-2540.
Petzold L, Robinson ASkaja, Doyle, III FJ, Raden D, Hildebrandt S.  2008.  A top-down approach to mechanistic biological modeling: Application to the single-chain antibody folding pathway. BIOPHYSICAL JOURNAL. 95:3535-3558.
Petzold L, Doyle, III F, Webb ABrooke, Herzog E, Taylor S.  2011.  The origins and consequences of heterogeneous neurons in a molecular oscillator model of the mammalian circadian clock. 25
Petzold L, Li H.  2010.  EFFICIENT PARALLELIZATION OF THE STOCHASTIC SIMULATION ALGORITHM FOR CHEMICALLY REACTING SYSTEMS ON THE GRAPHICS PROCESSING UNIT. INTERNATIONAL JOURNAL OF HIGH PERFORMANCE COMPUTING APPLICATIONS. 24:107-116.
Petzold L, Li ST, Cao Y.  2002.  Adjoint sensitivity analysis for differential-algebraic equations: algorithms and software. JOURNAL OF COMPUTATIONAL AND APPLIED MATHEMATICS. 149:171-191.
Petzold L, Bales B, Pollock T.  2017.  Segmentation-free image processing and analysis of precipitate shapes in 2D and 3D. MODELLING AND SIMULATION IN MATERIALS SCIENCE AND ENGINEERING. 25
Petzold L, Drawert B, Khammash M, Lawson MJ.  2010.  The diffusive finite state projection algorithm for efficient simulation of the stochastic reaction-diffusion master equation. JOURNAL OF CHEMICAL PHYSICS. 132
Petzold L, Drawert B, Khammash M, Yi T-M, Lawson MJ.  2013.  Spatial Stochastic Dynamics Enable Robust Cell Polarization. PLOS COMPUTATIONAL BIOLOGY. 9
Petzold L, Hellander S.  2017.  Reaction rates for reaction-diffusion kinetics on unstructured meshes. JOURNAL OF CHEMICAL PHYSICS. 146
Petzold L, Krintz C.  2012.  Stochastic Simulation Service: Towards an Integrated Development Environment for Modeling and Simulation of Stochastic Biochemical Systems. :2303-2324.
Petzold LR, Lampoudi S, Hulbert RR, Cotter PA, Williams CL.  2006.  The development of a model of a bacterial phosphorelay signal transduction system. :66-66.
Petzold L, Zhu WJ.  1999.  Parallel sensitivity analysis for DAEs with many parameters. CONCURRENCY-PRACTICE AND EXPERIENCE. 11:571-585.

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