Publications

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Petzold LR, Cao Y, Li H, Gillespie DT.  2008.  Algorithms and software for stochastic simulation of biochemical reacting systems. BIOTECHNOLOGY PROGRESS. 24:56-61.
Petzold L, Hellander S.  2017.  Reaction rates for reaction-diffusion kinetics on unstructured meshes. JOURNAL OF CHEMICAL PHYSICS. 146
Petzold L, Zhang Y, Jiang R.  2017.  Survival Topic Models for Predicting Outcomes for Trauma Patients. IEEE International Conference on Data Engineering. :1497-1504.
Petzold L, Li ST, Cao Y.  2002.  Adjoint sensitivity analysis for differential-algebraic equations: algorithms and software. JOURNAL OF COMPUTATIONAL AND APPLIED MATHEMATICS. 149:171-191.
Petzold L, Bales B, Pollock T.  2017.  Segmentation-free image processing and analysis of precipitate shapes in 2D and 3D. MODELLING AND SIMULATION IN MATERIALS SCIENCE AND ENGINEERING. 25
Petzold L, Meinhart C, Zhu LD, Tretheway D.  2005.  Simulation of fluid slip at 3D hydrophobic microchannel walls by the lattice Boltzmann method. JOURNAL OF COMPUTATIONAL PHYSICS. 202:181-195.
Petzold L, Bhattacharjee K.  2015.  Detecting Opinions in a Temporally Evolving Conversation on Twitter. Lecture Notes in Computer Science. 9471:82-97.
Petzold L, Krintz C.  2012.  Stochastic Simulation Service: Towards an Integrated Development Environment for Modeling and Simulation of Stochastic Biochemical Systems. :2303-2324.
Petzold LR, Lampoudi S, Hulbert RR, Cotter PA, Williams CL.  2006.  The development of a model of a bacterial phosphorelay signal transduction system. :66-66.
Petzold L, Bhattacharjee K.  2016.  What Drives Consumer Choices? Mining Aspects and Opinions on Large Scale Review Data using Distributed Representation of Words International Conference on Data Mining Workshops. :908-915.
Petzold L, Buoni M.  2010.  An algorithm for simulation of electrochemical systems with surface-bulk coupling strategies. JOURNAL OF COMPUTATIONAL PHYSICS. 229:379-398.
Petzold L, Zhu WJ.  1999.  Parallel sensitivity analysis for DAEs with many parameters. CONCURRENCY-PRACTICE AND EXPERIENCE. 11:571-585.
Petzold L, Simeon B, Zheng Z.  2008.  A stabilized explicit Lagrange multiplier based domain decomposition method for parabolic problems. JOURNAL OF COMPUTATIONAL PHYSICS. 227:5272-5285.
Petzold L, Gillespie D, Cao Y.  2005.  Multiscale stochastic simulation algorithm with stochastic partial equilibrium assumption for chemically reacting systems. JOURNAL OF COMPUTATIONAL PHYSICS. 206:395-411.
Petzold L, Bhattacharjee K.  2014.  Probabilistic User-Level Opinion Detection on Online Social Networks. Lecture Notes in Computer Science. 8851:309-325.
Petzold L, Cao Y.  2003.  A subspace error estimate or linear systems. SIAM JOURNAL ON MATRIX ANALYSIS AND APPLICATIONS. 24:787-801.
Petzold L, Cao Y.  2004.  A posteriori error estimation and global error control for ordinary differential equations by the adjoint method. SIAM JOURNAL ON SCIENTIFIC COMPUTING. 26:359-374.
Petzold L, Sturrock M, Chaplain MAJ, Aldakheel S, Hellander A.  2014.  The Role of Dimerisation and Nuclear Transport in the Hes1 Gene Regulatory Network. BULLETIN OF MATHEMATICAL BIOLOGY. 76:766-798.
Petzold L, Cao Y.  2006.  Accuracy limitations and the measurement of errors in the stochastic simulation of chemically reacting systems. JOURNAL OF COMPUTATIONAL PHYSICS. 212:6-24.
Petzold L., Buoni M..  2009.  An algorithm for simulation of electrochemical systems with surface-bulk coupling strategies. :296-302.
Petzold L, Hellander S.  2016.  Reaction rates for a generalized reaction-diffusion master equation. PHYSICAL REVIEW E. 93
Petzold L, Zheng Z.  2006.  Runge-Kutta-Chebyshev projection method. JOURNAL OF COMPUTATIONAL PHYSICS. 219:976-991.
Petzold L, Drawert B, Khammash M, Lawson MJ.  2010.  The diffusive finite state projection algorithm for efficient simulation of the stochastic reaction-diffusion master equation. JOURNAL OF CHEMICAL PHYSICS. 132
Petzold L, Drawert B, Khammash M, Yi T-M, Lawson MJ.  2013.  Spatial Stochastic Dynamics Enable Robust Cell Polarization. PLOS COMPUTATIONAL BIOLOGY. 9
Petzold L, Cao Y, Li S, Serban R.  2006.  Sensitivity analysis of differential-algebraic equations and partial differential equations. COMPUTERS & CHEMICAL ENGINEERING. 30:1553-1559.

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