Publications

Found 627 results
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Journal Article
Daigle, Jr. BJ, Petzold LR, Singh A, Soltani M.  2015.  Inferring single-cell gene expression mechanisms using stochastic simulation. BIOINFORMATICS. 31:1428-1435.
Doyle, III FJ, Wang Y.  2013.  The influence of global cues and local coupling on the rate of synchronization in the presence of time delays. AUTOMATICA. 49:1838-1845.
Doyle, III FJ, Wang Y.  2011.  On influences of global and local cues on the rate of synchronization of oscillator networks. AUTOMATICA. 47:1236-1242.
Ward JD, Doherty MF, MELLICHAMP DA.  2006.  Insight from economically optimal steady-state operating policies for dynamic plantwide control. INDUSTRIAL & ENGINEERING CHEMISTRY RESEARCH. 45:1343-1353.
Morse DE, Doyle, III FJ, Ananthasubramaniam B, Nisbet RM.  2011.  Integrate-and-fire models of insolation-driven entrainment of broadcast spawning in corals. THEORETICAL ECOLOGY. 4:69-85.
Liu AC, Priest AA, Zhang EE, Welsh DK, Verma IM, Takahashi JS, Doyle, III FJ, Kay SA, Singer O, Tran HG et al..  2007.  Intercellular coupling confers robustness against mutations in the SCN circadian clock network. CELL. 129:605-616.
Doyle, III FJ, Hori Y, Wang Y, Hara S.  2014.  Intercellular Delay Regulates the Collective Period of Repressively Coupled Gene Regulatory Oscillator Networks. IEEE TRANSACTIONS ON AUTOMATIC CONTROL. 59:211-216.
Gunawan R, Doyle, III FJ.  2006.  Isochron-based phase response analysis of circadian rhythms. BIOPHYSICAL JOURNAL. 91:2131-2141.
Doyle FJ, Gunawan R, Gadkar KG.  2005.  Iterative approach to model identification of biological networks. BMC BIOINFORMATICS. 6
MOORE KL, BHATTACHARYYA SP, Dahleh M.  1992.  ITERATIVE LEARNING CONTROL - A SURVEY AND NEW RESULTS. JOURNAL OF ROBOTIC SYSTEMS. 9:563-594.
Turner KL, Das S, Israelachvili JN, Yu J, Chary S, Tamelier J.  2013.  JKR Theory for the Stick Slip Peeling and Adhesion Hysteresis of Gecko Mimetic Patterned Surfaces with a Smooth Glass Surface. LANGMUIR. 29:15006-15012.
Bullo F, Doerfler F.  2013.  Kron Reduction of Graphs With Applications to Electrical Networks. IEEE TRANSACTIONS ON CIRCUITS AND SYSTEMS I-REGULAR PAPERS. 60:150-163.
Teel A.R, Dullerud G.E, Heemels W.PMH.  2016.  L-2-Gain Analysis for a Class of Hybrid Systems With Applications to Reset and Event-Triggered Control: A Lifting Approach. IEEE TRANSACTIONS ON AUTOMATIC CONTROL. 61:2766-2781.
Krintz C, Drawert B, Petzold L, Chohan N, Shams K, Bunch C.  2012.  Language and Runtime Support for Automatic Configuration and Deployment of Scientific Computing Software over Cloud Fabrics. JOURNAL OF GRID COMPUTING. 10:23-46.
Madhow U, Singh J, Dabeer O.  2009.  On the Limits of Communication with Low-Precision Analog-to-Digital Conversion at the Receiver. IEEE TRANSACTIONS ON COMMUNICATIONS. 57:3629-3639.
Shaw SW, Turner KL, Moehlis J, Rhoads JF, DeMartini BE.  2007.  Linear and nonlinear tuning of parametrically excited MEMS oscillators. JOURNAL OF MICROELECTROMECHANICAL SYSTEMS. 16:310-318.
Bamieh B, Megretski A, Dahleh M.  1996.  On l(infinity) robust stability and performance with l(2) and l(infinity) perturbations. SYSTEMS & CONTROL LETTERS. 28:1-6.
Petzold L, Drawert B, Hellander A, Lawson MJ.  2014.  Local error estimates for adaptive simulation of the reaction-diffusion master equation via operator splitting. JOURNAL OF COMPUTATIONAL PHYSICS. 266:89-100.
Kotsonis M., Tol H.J, Bamieh B., de Visser C.C.  2017.  Localised estimation and control of linear instabilities in two-dimensional wall-bounded shear flows. JOURNAL OF FLUID MECHANICS. 824:818-865.
Drawert B, Golkaram M, Petzold LR, Hellander S.  2016.  Macromolecular Crowding Regulates the Gene Expression Profile by Limiting Diffusion. PLOS COMPUTATIONAL BIOLOGY. 12
Seshadri R, Suard E, Melot BC, Nenert G, Lawes G, Paden B, Dixit A.  2010.  Magnetic structure and susceptibility of CoSe2O5: An antiferromagnetic chain compound. PHYSICAL REVIEW B. 82
Junker ST, Doyle FJ, Birkmire RW.  2004.  Manufacture of thin-film solar cells: Modeling and control of Cu(InGa)Se-2 physical vapor deposition onto a moving substrate. INDUSTRIAL & ENGINEERING CHEMISTRY RESEARCH. 43:566-576.
Junker ST, Doyle FJ, Birkmire RW.  2005.  Mass and heat transfer modeling of a physical vapor deposition effusion source. AICHE JOURNAL. 51:878-894.
Doyle FJ, Bhartiya S.  2004.  Mathematical model predictions of a plugging phenomenon in an industrial single-vessel pulp digester. INDUSTRIAL & ENGINEERING CHEMISTRY RESEARCH. 43:5225-5232.
Agrawal D, Nishimura S, Das S, Abbadi AEl.  2013.  MD-HBase: design and implementation of an elastic data infrastructure for cloud-scale location services. DISTRIBUTED AND PARALLEL DATABASES. 31:289-319.

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