Publications

Found 438 results
Author Title [ Type(Desc)] Year
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Journal Article
Shah VB, ReinhaRdt S, Gilbert J.  2011.  Some Graph Algorithms in an Array-Based Language. GRAPH ALGORITHMS IN THE LANGUAGE OF LINEAR ALGEBRA. 22:29-43.
Robinson A., Young C., Griesemer M., Petzold L..  2012.  Spatial localisation of chaperone distribution in the endoplasmic reticulum of yeast. IET SYSTEMS BIOLOGY. 6:54-U63.
Sahin OD, Ibarra O, Gerede CE, Agrawal D, A Abbadi E, Su JW.  2005.  SPiDeR: P2P-based Web service discovery. SERVICE-ORIENTED COMPUTING - ICSOC 2005, PROCEEDINGS. 3826:157-169.
Leonard MW, Sharma V, Jay LO, Gill PE, Petzold LR.  2000.  An SQP method for the optimal control of large-scale dynamical systems. JOURNAL OF COMPUTATIONAL AND APPLIED MATHEMATICS. 120:197-213.
Chandrasekaran S, Sayed AH, Gu M.  1998.  A stable and efficient algorithm for the indefinite linear least-squares problem. SIAM JOURNAL ON MATRIX ANALYSIS AND APPLICATIONS. 20:354-362.
Guittet A, Gibou F, Theillard M.  2015.  A stable projection method for the incompressible Navier-Stokes equations on arbitrary geometries and adaptive Quad/Octrees. JOURNAL OF COMPUTATIONAL PHYSICS. 292:215-238.
Guittet A, Gibou F, Theillard M.  2015.  A stable projection method for the incompressible Navier-Stokes equations on arbitrary geometries and adaptive Quad/Octrees. JOURNAL OF COMPUTATIONAL PHYSICS. 292:215-238.
Gillespie DT, Petzold LR, Roh MK.  2010.  State-dependent biasing method for importance sampling in the weighted stochastic simulation algorithm. JOURNAL OF CHEMICAL PHYSICS. 133
Daigle, Jr. BJ, Gillespie DT, Petzold LR, Roh MK.  2011.  State-dependent doubly weighted stochastic simulation algorithm for automatic characterization of stochastic biochemical rare events. JOURNAL OF CHEMICAL PHYSICS. 135
Griffin DW, Ward JD, Mellichamp DA, Doherty MF.  2006.  Steady-state operating policies for plants with multiple reactions of equal overall order. INDUSTRIAL & ENGINEERING CHEMISTRY RESEARCH. 45:8056-8062.
Gillespie DT, Cao Y, Rathinam M, Petzold LR.  2003.  Stiffness in stochastic chemically reacting systems: The implicit tau-leaping method. JOURNAL OF CHEMICAL PHYSICS. 119:12784-12794.
H Samad E, Petzold L, Gillespie D, Khammash M.  2005.  Stochastic modelling of gene regulatory networks. INTERNATIONAL JOURNAL OF ROBUST AND NONLINEAR CONTROL. 15:691-711.
Krintz C, Drawert B, Bellesia G, Nath D, Gupta A, Horuk C, Daigle, Jr. BJ, Hellander S, Douglas G, Petzold LR et al..  2016.  Stochastic Simulation Service: Bridging the Gap between the Computational Expert and the Biologist. PLOS COMPUTATIONAL BIOLOGY. 12
Krintz C, Drawert B, Bellesia G, Nath D, Gupta A, Horuk C, Daigle, Jr. BJ, Hellander S, Douglas G, Petzold LR et al..  2016.  Stochastic Simulation Service: Bridging the Gap between the Computational Expert and the Biologist. PLOS COMPUTATIONAL BIOLOGY. 12
McKeon B.J, Doyle J.C, Gayme D.F, Bamieh B., Papachristodoulou A..  2010.  A streamwise constant model of turbulence in plane Couette flow. JOURNAL OF FLUID MECHANICS. 665:99-119.
GUILHAUS M,, BEYNON JH, OKEEFE A, BOWERS MT, BRENTON AG.  1985.  STRUCTURAL DIFFERENCES BETWEEN METASTABLE NO2+ IONS FORMED BY ELECTRON IONIZATION OF NO2 AND VIA AN ION MOLECULE REACTION BETWEEN N-3+ AND O-2. INTERNATIONAL JOURNAL OF MASS SPECTROMETRY AND ION PROCESSES. 63:111-118.
Cao Y, Gillespie DT, Petzold LR, Sanft KR.  2009.  The subtle business of model reduction for stochastic chemical kinetics. JOURNAL OF CHEMICAL PHYSICS. 130
Zhu J., Xia J., Gu M., Sun X., Chandrasekaran S..  2007.  A superfast algorithm for toeplitz systems of linear equations. SIAM JOURNAL ON MATRIX ANALYSIS AND APPLICATIONS. 29:1247-1266.
Li XS, Gu M, Xia J, Chandrasekaran S.  2009.  SUPERFAST MULTIFRONTAL METHOD FOR LARGE STRUCTURED LINEAR SYSTEMS OF EQUATIONS. SIAM JOURNAL ON MATRIX ANALYSIS AND APPLICATIONS. 31:1382-1411.
Chen H, Min C, Gibou F.  2007.  A supra-convergent finite difference scheme for the poisson and heat equations on irregular domains and non-graded adaptive cartesian grids. JOURNAL OF SCIENTIFIC COMPUTING. 31:19-60.
Ceniceros HD, Min C, Gibou F.  2006.  A supra-convergent finite difference scheme for the variable coefficient Poisson equation on non-graded grids. JOURNAL OF COMPUTATIONAL PHYSICS. 218:123-140.
Gross CA, El-Samad H, Doyle JC, Khammash M, Kurata H.  2005.  Surviving heat shock: Control strategies for robustness and performance. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 102:2736-2741.
Grigori L, Gilbert JR, Cosnard M.  2008.  SYMBOLIC AND EXACT STRUCTURE PREDICTION FOR SPARSE GAUSSIAN ELIMINATION WITH PARTIAL PIVOTING. SIAM JOURNAL ON MATRIX ANALYSIS AND APPLICATIONS. 30:1520-1545.
Grigori L, Gilbert JR, Cosnard M.  2008.  SYMBOLIC AND EXACT STRUCTURE PREDICTION FOR SPARSE GAUSSIAN ELIMINATION WITH PARTIAL PIVOTING. SIAM JOURNAL ON MATRIX ANALYSIS AND APPLICATIONS. 30:1520-1545.
Doyle, III FJ, Shoemaker J, Bagheri N, Mirsky H, Petzold L, Gunawan R, Hildebrandt S, Taylor S.  2010.  Systems Analysis for Systems Biology. SYSTEMS BIOMEDICINE: CONCEPTS AND PERSPECTIVES. :249-272.

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