Publications
An error estimate for matrix equations. APPLIED NUMERICAL MATHEMATICS. 50:395-407.
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2004. A framework for discrete stochastic simulation on 3D moving boundary domains. JOURNAL OF CHEMICAL PHYSICS. 145
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2016. Efficient formulation of the stochastic simulation algorithm for chemically reacting systems. JOURNAL OF CHEMICAL PHYSICS. 121:4059-4067.
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2004. Accelerated stochastic simulation of the stiff enzyme-substrate reaction. JOURNAL OF CHEMICAL PHYSICS. 123
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2005. A stabilized explicit Lagrange multiplier based domain decomposition method for parabolic problems. JOURNAL OF COMPUTATIONAL PHYSICS. 227:5272-5285.
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2008. Automatic identification of model reductions for discrete stochastic simulation. JOURNAL OF CHEMICAL PHYSICS. 137
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2012. Multivariate soft repulsive system identification for constructing rule-based classification systems: Application to trauma clinical data. NEUROCOMPUTING. 245:77-85.
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2017. Slow-scale tau-leaping method. COMPUTER METHODS IN APPLIED MECHANICS AND ENGINEERING. 197:3472-3479.
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2008. The time dependent propensity function for acceleration of spatial stochastic simulation of reaction-diffusion systems. JOURNAL OF COMPUTATIONAL PHYSICS. 274:524-549.
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2014. Asymptotic stability of Hessenberg delay differential-algebraic equations of retarded or neutral type. APPLIED NUMERICAL MATHEMATICS. 27:309-325.
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1998. Error estimation for reduced-order models of dynamical systems. SIAM REVIEW. 49:277-299.
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2007. Avoiding negative populations in explicit Poisson tau-leaping. JOURNAL OF CHEMICAL PHYSICS. 123
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2005. Reaction rates for mesoscopic reaction-diffusion kinetics. PHYSICAL REVIEW E. 91
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2015. Michaelis-Menten speeds up tau-leaping under a wide range of conditions. JOURNAL OF CHEMICAL PHYSICS. 134
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2011. Direct Higher Order Fuzzy Rule-based Classification System: Application in Mortality Prediction. IEEE International Conference on Bioinformatics and Biomedicine-BIBM. :846-852.
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2015. .
2015. Adjoint sensitivity analysis for time-dependent partial differential equations with adaptive mesh refinement. JOURNAL OF COMPUTATIONAL PHYSICS. 198:310-325.
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2004. Model reduction for chemical kinetics: An optimization approach. AICHE JOURNAL. 45:869-886.
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1999. The slow-scale stochastic simulation algorithm. JOURNAL OF CHEMICAL PHYSICS. 122
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2005. Sensitivity analysis of differential-algebraic equations: A comparison of methods on a special problem. APPLIED NUMERICAL MATHEMATICS. 32:161-174.
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2000. Numerical Scaling Studies of Kinetically-Limited Electrochemical Nucleation and Growth with Accelerated Stochastic Simulations. JOURNAL OF THE ELECTROCHEMICAL SOCIETY. 161:E3001-E3008.
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2014. An exact and efficient first passage time algorithm for reaction diffusion processes on a 2D-lattice. JOURNAL OF COMPUTATIONAL PHYSICS. 256:183-197.
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2014. An efficient, scalable numerical algorithm for the simulation of electrochemical systems on irregular domains. JOURNAL OF COMPUTATIONAL PHYSICS. 225:2320-2332.
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2007. Improved leap-size selection for accelerated stochastic simulation. JOURNAL OF CHEMICAL PHYSICS. 119:8229-8234.
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2003. Sensitivity analysis of differential-algebraic equations and partial differential equations. COMPUTERS & CHEMICAL ENGINEERING. 30:1553-1559.
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2006.