Publications

Found 331 results
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Journal Article
Larimore SI,, Ng EG, Davis TA.  2004.  A column approximate minimum degree ordering algorithm. ACM TRANSACTIONS ON MATHEMATICAL SOFTWARE. 30:353-376.
Liang X, A. Hart J, Purohit PK, Gianola DS, Turner K, Jiang Y, Magagnosc D, Park SJin, Shin J.  2017.  Compression and recovery of carbon nanotube forests described as a phase transition. INTERNATIONAL JOURNAL OF SOLIDS AND STRUCTURES. 122:196-209.
Luni C, Doyle, III FJ, Marth JD.  2012.  Computational Modeling of Glucose Transport in Pancreatic beta-Cells Identifies Metabolic Thresholds and Therapeutic Targets in Diabetes. PLOS ONE. 7
Luni C, Shoemaker JE, Petzold LR, Doyle, III FJ, Sanft KR.  2010.  Confidence from uncertainty - A multi-target drug screening method from robust control theory. BMC SYSTEMS BIOLOGY. 4
Hu TS, Teel AR, Lin ZL, Goebel R.  2006.  Conjugate convex Lyapunov functions for dual linear differential inclusions. IEEE TRANSACTIONS ON AUTOMATIC CONTROL. 51:661-666.
Hu TS, Teel AR, Lin ZL, Goebel R.  2005.  Conjugate Lyapunov functions for saturated linear systems. AUTOMATICA. 41:1949-1956.
Manjunath BS, Mitra SK, Li H.  1995.  A CONTOUR-BASED APPROACH TO MULTISENSOR IMAGE REGISTRATION. IEEE TRANSACTIONS ON IMAGE PROCESSING. 4:320-334.
Hespanha JP, Liberzon D, Pearson J.  2017.  Control With Minimal Cost-Per-Symbol Encoding and Quasi-Optimality of Event-Based Encoders. IEEE TRANSACTIONS ON AUTOMATIC CONTROL. 62:2286-2301.
Turner K, Adams JD, H. Soh T, Cochran FV, Liu Y, Gambhir SSam.  2009.  Controlling the selection stringency of phage display using a microfluidic device. LAB ON A CHIP. 9:1033-1036.
LIONS PL, CRANDALL MG.  1996.  Convergent difference schemes for nonlinear parabolic equations and mean curvature motion. NUMERISCHE MATHEMATIK. 75:17-41.
Jankovic M, Kokotovic PV, Larsen M.  2003.  Coordinated passivation designs. AUTOMATICA. 39:335-341.
Joanny J-F, Leduc C, Casademunt J, Bassereau P, Campas O, Prost J.  2008.  Coordination of kinesin motors pulling on fluid membranes. BIOPHYSICAL JOURNAL. 94:5009-5017.
Lee JJ, Doyle, III FJ, Zisser H, Dassau E.  2014.  Design and in silico evaluation of an intraperitoneal-subcutaneous (IP-SC) artificial pancreas. COMPUTERS & CHEMICAL ENGINEERING. 70:180-188.
Kosik KS, Puskar K, Nelson SF, Petzold L, Liu T, Papagiannakopoulos T, Lao K, Lee Y, Clay W, Santiago F et al..  2007.  Detection of a MicroRNA Signal in an In Vivo Expression Set of mRNAs. PLOS ONE. 2
Kosik KS, Puskar K, Nelson SF, Petzold L, Liu T, Papagiannakopoulos T, Lao K, Lee Y, Clay W, Santiago F et al..  2007.  Detection of a MicroRNA Signal in an In Vivo Expression Set of mRNAs. PLOS ONE. 2
Kosik KS, Puskar K, Nelson SF, Petzold L, Liu T, Papagiannakopoulos T, Lao K, Lee Y, Clay W, Santiago F et al..  2007.  Detection of a MicroRNA Signal in an In Vivo Expression Set of mRNAs. PLOS ONE. 2
Petzold L, Drawert B, Khammash M, Lawson MJ.  2010.  The diffusive finite state projection algorithm for efficient simulation of the stochastic reaction-diffusion master equation. JOURNAL OF CHEMICAL PHYSICS. 132
Lillacci G, Khammash M.  2012.  A distribution-matching method for parameter estimation and model selection in computational biology. INTERNATIONAL JOURNAL OF ROBUST AND NONLINEAR CONTROL. 22:1065-1081.
Crnjaric-Zic N, Loire S, Hogan PJ, Macesic S, Ivic S, Valentine DL, Fonoberov VA, Mezic I.  2012.  Dynamic autoinoculation and the microbial ecology of a deep water hydrocarbon irruption. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 109:20286-20291.
Khammash M, Loehning M, Allgoewer F, Hasenauer J.  2012.  Dynamical optimization using reduced order models: A method to guarantee performance. JOURNAL OF PROCESS CONTROL. 22:1490-1501.
Lampoudi S, Gillespie DT, Petzold LR.  2009.  Effect of excluded volume on 2D discrete stochastic chemical kinetics. JOURNAL OF COMPUTATIONAL PHYSICS. 228:3656-3668.
Lampoudi S, Gillespie DT, Petzold LR.  2007.  Effect of reactant size on discrete stochastic chemical kinetics. JOURNAL OF CHEMICAL PHYSICS. 126
Petzold L, Li H, Cao Y.  2004.  Efficient formulation of the stochastic simulation algorithm for chemically reacting systems. JOURNAL OF CHEMICAL PHYSICS. 121:4059-4067.
Petzold L, Li H.  2010.  EFFICIENT PARALLELIZATION OF THE STOCHASTIC SIMULATION ALGORITHM FOR CHEMICALLY REACTING SYSTEMS ON THE GRAPHICS PROCESSING UNIT. INTERNATIONAL JOURNAL OF HIGH PERFORMANCE COMPUTING APPLICATIONS. 24:107-116.
Yu HL, Li HG, A Abbadi E, Agrawal D, Wu P.  2005.  Efficient processing of distributed top-k queries. DATABASE AND EXPERT SYSTEMS APPLICATIONS, PROCEEDINGS. 3588:65-74.

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