Publications

Found 2855 results
[ Author(Desc)] Title Type Year
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Doyle, III FJ, Rodriguez-Fernandez M, Timmer J, Klett H, Leon LR, Dineen S.  2015.  Modeling the inflammatory response in the hypothalamus ensuing heat stroke: Iterative cycle of model calibration, identifiability analysis, experimental design and data collection. MATHEMATICAL BIOSCIENCES. 260:35-46.
Doyle FJ, Schwaber JS, Zak DE, Gonye GE.  2003.  Importance of input perturbations and stochastic gene expression in the reverse engineering of genetic regulatory networks: Insights from an identifiability analysis of an in silico network. GENOME RESEARCH. 13:2396-2405.
Doyle, III FJ, B. Bequette W, Dassau E, Wilson DM, Buckingham BA, H. Chase P, Zisser H, Lee H, Jovanovic L, Cameron F.  2010.  Real-Time Hypoglycemia Prediction Suite Using Continuous Glucose Monitoring A safety net for the artificial pancreas. DIABETES CARE. 33:1249-1254.
Doyle FJ, Hernjak N.  2005.  Glucose control design using nonlinearity assessment techniques. AICHE JOURNAL. 51:544-554.
Doyle FJ, Xu P, Robinson AS, Bell E, Hildebrandt S, Raden D.  2005.  Analysis of cellular response to protein overexpression. IEE PROCEEDINGS SYSTEMS BIOLOGY. 152:285-289.
Doyle FJ, Gilles ED, Stelling J.  2004.  Robustness properties of circadian clock architectures. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 101:13210-13215.
Doyle FJ, Saffer DR.  2004.  Analysis of linear programming in model predictive control. COMPUTERS & CHEMICAL ENGINEERING. 28:2749-2763.
Doyle FJ, Cordeiro CF, Sundaram SS, Immanuel CD.  2003.  Population balance PSD model for emulsion polymerization with steric stabilizers. AICHE JOURNAL. 49:1392-1404.
Doyle FJ, Robinson AS, Raden D, Xu P.  2005.  Analysis of unfolded protein response during single-chain antibody expression in Saccaromyces cerevisiae reveals different roles for BiP and PDI in folding. METABOLIC ENGINEERING. 7:269-279.
Doyle, III FJ, Litster JD, Cameron IT, Immanuel CD, Poon JM-H, Ramachandran R, Glaser T, Wang F.Y, Sanders CFW.  2009.  Model predictive control of continuous drum granulation. JOURNAL OF PROCESS CONTROL. 19:615-622.
Doyle, III FJ, Shoemaker JE, Gunawan R, Mirsky H, Stelling J, Taylor SR, Bagheri N, Kwei E.  2009.  Automatic Control in Systems Biology. SPRINGER HANDBOOK OF AUTOMATION. :1335-1360.
Doyle, III FJ, Mensh BD, Burnett DR, Huyett LM, Zisser HC.  2014.  Glucose Sensing in the Peritoneal Space Offers Faster Kinetics Than Sensing in the Subcutaneous Space. DIABETES. 63:2498-2505.
Doyle, III FJ, Zisser H, Dassau E, Campos-Cornejo F, Jovanovic L, Campos-Delgado DU, Espinoza-Trejo D.  2010.  An Advisory Protocol for Rapid- and Slow-Acting Insulin Therapy Based on a Run-to-Run Methodology. DIABETES TECHNOLOGY & THERAPEUTICS. 12:555-565.
Doyle, III FJ, Pinsker JE, Forlenza GP, Ly TT, Reuschel-DiVirgilio S, Maahs DM, Gondhalekar R, Dassau E, R. Wadwa P, Messer LH et al..  2017.  Outpatient Closed-Loop Control with Unannounced Moderate Exercise in Adolescents Using Zone Model Predictive Control. DIABETES TECHNOLOGY & THERAPEUTICS. 19:331-339.
Doyle, III FJ, B. Bequette W, Forlenza GP, Ly TT, Howsmon DP, Pinsker JE, Mauritzen E, Cameron F, Dassau E, Deshpande S et al..  2017.  Application of Zone Model Predictive Control Artificial Pancreas During Extended Use of Infusion Set and Sensor: A Randomized Crossover-Controlled Home-Use Trial. DIABETES CARE. 40:1096-1102.
Doyle, III FJ, Magrofuoco E, Elvassore N.  2012.  Theoretical analysis of insulin-dependent glucose uptake heterogeneity in 3D bioreactor cell culture. BIOTECHNOLOGY PROGRESS. 28:833-845.
Doyle, III FJ, Pinto MA, Immanuel CD.  2008.  A two-level discretisation algorithm for the efficient solution of higher-dimensional population balance models. CHEMICAL ENGINEERING SCIENCE. 63:1304-1314.
Doyle, III FJ, Villeneuve DL, Shoemaker JE, Garcia-Reyero N, Perkins EJ, Liu L, Gayen K.  2010.  Fathead minnow steroidogenesis: in silico analyses reveals tradeoffs between nominal target efficacy and robustness to cross-talk. BMC SYSTEMS BIOLOGY. 4
Doyle, III FJ, B. Bequette W, Dassau E, Clinton P, Wilkinson J, Cameron F, H. Chase P, Cobry E, Lee H, Caswell K et al..  2010.  Prevention of Nocturnal Hypoglycemia Using Predictive Alarm Algorithms and Insulin Pump Suspension. DIABETES CARE. 33:1013-1017.
Doyle, III FJ, Pinto MA, Immanuel CD.  2007.  A feasible solution technique for higher-dimensional population balance models. COMPUTERS & CHEMICAL ENGINEERING. 31:1242-1256.
Doyle FJ, Mahadevan R, Edwards JS, Gadkar KG.  2005.  Estimating optimal profiles of genetic alterations using constraint-based models. BIOTECHNOLOGY AND BIOENGINEERING. 89:243-251.
Doyle, III FJ, Pistikopoulos EN, Dua P.  2006.  Model-based blood glucose control for Type 1 diabetes via parametric programming. IEEE TRANSACTIONS ON BIOMEDICAL ENGINEERING. 53:1478-1491.
Doyle FJ, Schwaber JS, Ogunnaike BA, Vadigepalli R, Zak DE, Gonye GE.  2005.  Unconventional systems analysis problems in molecular biology: a case study in gene regulatory network modeling. COMPUTERS & CHEMICAL ENGINEERING. 29:547-563.
Doyle, III FJ, Herzog ED, Thoroughman KA, Taylor SR, Webb AB.  2012.  Weakly Circadian Cells Improve Resynchrony. PLOS COMPUTATIONAL BIOLOGY. 8
Doyle, III FJ, Pistikopoulos EN, Dua P.  2009.  Multi-objective blood glucose control for type 1 diabetes. MEDICAL & BIOLOGICAL ENGINEERING & COMPUTING. 47:343-352.

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