Publications

Found 438 results
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Griffin DW, Ward JD, Mellichamp DA, Doherty MF.  2006.  Steady-state operating policies for plants with multiple reactions of equal overall order. INDUSTRIAL & ENGINEERING CHEMISTRY RESEARCH. 45:8056-8062.
Gillespie DT, Cao Y, Rathinam M, Petzold LR.  2003.  Stiffness in stochastic chemically reacting systems: The implicit tau-leaping method. JOURNAL OF CHEMICAL PHYSICS. 119:12784-12794.
H Samad E, Petzold L, Gillespie D, Khammash M.  2005.  Stochastic modelling of gene regulatory networks. INTERNATIONAL JOURNAL OF ROBUST AND NONLINEAR CONTROL. 15:691-711.
Krintz C, Drawert B, Bellesia G, Nath D, Gupta A, Horuk C, Daigle, Jr. BJ, Hellander S, Douglas G, Petzold LR et al..  2016.  Stochastic Simulation Service: Bridging the Gap between the Computational Expert and the Biologist. PLOS COMPUTATIONAL BIOLOGY. 12
Krintz C, Drawert B, Bellesia G, Nath D, Gupta A, Horuk C, Daigle, Jr. BJ, Hellander S, Douglas G, Petzold LR et al..  2016.  Stochastic Simulation Service: Bridging the Gap between the Computational Expert and the Biologist. PLOS COMPUTATIONAL BIOLOGY. 12
McKeon B.J, Doyle J.C, Gayme D.F, Bamieh B., Papachristodoulou A..  2010.  A streamwise constant model of turbulence in plane Couette flow. JOURNAL OF FLUID MECHANICS. 665:99-119.
GUILHAUS M,, BEYNON JH, OKEEFE A, BOWERS MT, BRENTON AG.  1985.  STRUCTURAL DIFFERENCES BETWEEN METASTABLE NO2+ IONS FORMED BY ELECTRON IONIZATION OF NO2 AND VIA AN ION MOLECULE REACTION BETWEEN N-3+ AND O-2. INTERNATIONAL JOURNAL OF MASS SPECTROMETRY AND ION PROCESSES. 63:111-118.
Cao Y, Gillespie DT, Petzold LR, Sanft KR.  2009.  The subtle business of model reduction for stochastic chemical kinetics. JOURNAL OF CHEMICAL PHYSICS. 130
Zhu J., Xia J., Gu M., Sun X., Chandrasekaran S..  2007.  A superfast algorithm for toeplitz systems of linear equations. SIAM JOURNAL ON MATRIX ANALYSIS AND APPLICATIONS. 29:1247-1266.
Li XS, Gu M, Xia J, Chandrasekaran S.  2009.  SUPERFAST MULTIFRONTAL METHOD FOR LARGE STRUCTURED LINEAR SYSTEMS OF EQUATIONS. SIAM JOURNAL ON MATRIX ANALYSIS AND APPLICATIONS. 31:1382-1411.
Gupta A., Madhow U., Arbabian A..  2016.  Super-Resolution in Position and Velocity Estimation for Short-Range MM-Wave Radar. Conference Record of the Asilomar Conference on Signals Systems and Computers. :1144-1148.
Chen H, Min C, Gibou F.  2007.  A supra-convergent finite difference scheme for the poisson and heat equations on irregular domains and non-graded adaptive cartesian grids. JOURNAL OF SCIENTIFIC COMPUTING. 31:19-60.
Ceniceros HD, Min C, Gibou F.  2006.  A supra-convergent finite difference scheme for the variable coefficient Poisson equation on non-graded grids. JOURNAL OF COMPUTATIONAL PHYSICS. 218:123-140.
Gross CA, El-Samad H, Doyle JC, Khammash M, Kurata H.  2005.  Surviving heat shock: Control strategies for robustness and performance. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 102:2736-2741.
Grigori L, Gilbert JR, Cosnard M.  2008.  SYMBOLIC AND EXACT STRUCTURE PREDICTION FOR SPARSE GAUSSIAN ELIMINATION WITH PARTIAL PIVOTING. SIAM JOURNAL ON MATRIX ANALYSIS AND APPLICATIONS. 30:1520-1545.
Grigori L, Gilbert JR, Cosnard M.  2008.  SYMBOLIC AND EXACT STRUCTURE PREDICTION FOR SPARSE GAUSSIAN ELIMINATION WITH PARTIAL PIVOTING. SIAM JOURNAL ON MATRIX ANALYSIS AND APPLICATIONS. 30:1520-1545.
Doyle, III FJ, Shoemaker J, Bagheri N, Mirsky H, Petzold L, Gunawan R, Hildebrandt S, Taylor S.  2010.  Systems Analysis for Systems Biology. SYSTEMS BIOMEDICINE: CONCEPTS AND PERSPECTIVES. :249-272.
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Backes P, Karumanchi S, Baldwin I, Kennedy B, Leichty J, Burdick J, Carlton J, Bergh C, Edelberg K, Shekels M et al..  2017.  Team RoboSimian: Semi-autonomous Mobile Manipulation at the 2015 DARPA Robotics Challenge Finals. JOURNAL OF FIELD ROBOTICS. 34:305-332.
Paden DB, Antaki JF, Snyder TA, Paden BE, Noh MD, Wu J, Gardiner JM.  2007.  Thermal analysis of the PediaFlow Pediatric Ventricular Assist Device. ASAIO JOURNAL. 53:65-73.
Lazar M., Gielen R.H, Teel A.R.  2013.  Tractable Razumikhin-type conditions for input-to-state stability analysis of delay difference inclusions. AUTOMATICA. 49:619-625.
Tanguy S, Popescu ERoxana, Lepilliez M, Gibou F.  2016.  On two-phase flow solvers in irregular domains with contact line. JOURNAL OF COMPUTATIONAL PHYSICS. 321:1217-1251.
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Doyle FJ, Schwaber JS, Ogunnaike BA, Vadigepalli R, Zak DE, Gonye GE.  2005.  Unconventional systems analysis problems in molecular biology: a case study in gene regulatory network modeling. COMPUTERS & CHEMICAL ENGINEERING. 29:547-563.
Kronauer RE, Doyle, III FJ, Van Dongen HPA, Gunzelmann G, Klerman EB.  2007.  Uncovering physiologic mechanisms of circadian rhythms and sleep/wake regulation through mathematical modeling. JOURNAL OF BIOLOGICAL RHYTHMS. 22:233-245.
Shah VB, ReinhaRdt S, Gilbert JR.  2008.  A unified framework for numerical and combinatorial computing. COMPUTING IN SCIENCE & ENGINEERING. 10:20-25.
Xu J, Singh V, Guan Z, Manjunath B.S.  2012.  UNIFIED HYPERGRAPH FOR IMAGE RANKING IN A MULTIMODAL CONTEXT. International Conference on Acoustics Speech and Signal Processing ICASSP. :2333-2336.

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