Publications

Found 438 results
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Journal Article
Krintz C, Drawert B, Bellesia G, Nath D, Gupta A, Horuk C, Daigle, Jr. BJ, Hellander S, Douglas G, Petzold LR et al..  2016.  Stochastic Simulation Service: Bridging the Gap between the Computational Expert and the Biologist. PLOS COMPUTATIONAL BIOLOGY. 12
H Samad E, Petzold L, Gillespie D, Khammash M.  2005.  Stochastic modelling of gene regulatory networks. INTERNATIONAL JOURNAL OF ROBUST AND NONLINEAR CONTROL. 15:691-711.
Gillespie DT, Cao Y, Rathinam M, Petzold LR.  2003.  Stiffness in stochastic chemically reacting systems: The implicit tau-leaping method. JOURNAL OF CHEMICAL PHYSICS. 119:12784-12794.
Griffin DW, Ward JD, Mellichamp DA, Doherty MF.  2006.  Steady-state operating policies for plants with multiple reactions of equal overall order. INDUSTRIAL & ENGINEERING CHEMISTRY RESEARCH. 45:8056-8062.
Daigle, Jr. BJ, Gillespie DT, Petzold LR, Roh MK.  2011.  State-dependent doubly weighted stochastic simulation algorithm for automatic characterization of stochastic biochemical rare events. JOURNAL OF CHEMICAL PHYSICS. 135
Gillespie DT, Petzold LR, Roh MK.  2010.  State-dependent biasing method for importance sampling in the weighted stochastic simulation algorithm. JOURNAL OF CHEMICAL PHYSICS. 133
Guittet A, Gibou F, Theillard M.  2015.  A stable projection method for the incompressible Navier-Stokes equations on arbitrary geometries and adaptive Quad/Octrees. JOURNAL OF COMPUTATIONAL PHYSICS. 292:215-238.
Guittet A, Gibou F, Theillard M.  2015.  A stable projection method for the incompressible Navier-Stokes equations on arbitrary geometries and adaptive Quad/Octrees. JOURNAL OF COMPUTATIONAL PHYSICS. 292:215-238.
Chandrasekaran S, Sayed AH, Gu M.  1998.  A stable and efficient algorithm for the indefinite linear least-squares problem. SIAM JOURNAL ON MATRIX ANALYSIS AND APPLICATIONS. 20:354-362.
Leonard MW, Sharma V, Jay LO, Gill PE, Petzold LR.  2000.  An SQP method for the optimal control of large-scale dynamical systems. JOURNAL OF COMPUTATIONAL AND APPLIED MATHEMATICS. 120:197-213.
Sahin OD, Ibarra O, Gerede CE, Agrawal D, A Abbadi E, Su JW.  2005.  SPiDeR: P2P-based Web service discovery. SERVICE-ORIENTED COMPUTING - ICSOC 2005, PROCEEDINGS. 3826:157-169.
Robinson A., Young C., Griesemer M., Petzold L..  2012.  Spatial localisation of chaperone distribution in the endoplasmic reticulum of yeast. IET SYSTEMS BIOLOGY. 6:54-U63.
Shah VB, ReinhaRdt S, Gilbert J.  2011.  Some Graph Algorithms in an Array-Based Language. GRAPH ALGORITHMS IN THE LANGUAGE OF LINEAR ALGEBRA. 22:29-43.
Gu M, Pals T, Chandrasekaran S, Van der Veen AJ, Dewilde P, Sun X, White D.  2005.  Some fast algorithms for sequentially semiseparable representations. SIAM JOURNAL ON MATRIX ANALYSIS AND APPLICATIONS. 27:341-364.
Budak C, Buluc A, Gilbert JR.  2010.  Solving path problems on the GPU. PARALLEL COMPUTING. 36:241-253.
Guittet A, Lepilliez M, Gibou F, Tanguy S.  2015.  Solving elliptic problems with discontinuities on irregular domains - the Voronoi Interface Method. JOURNAL OF COMPUTATIONAL PHYSICS. 298:747-765.
Guittet A, Lepilliez M, Gibou F, Tanguy S.  2015.  Solving elliptic problems with discontinuities on irregular domains - the Voronoi Interface Method. JOURNAL OF COMPUTATIONAL PHYSICS. 298:747-765.
Teel AR, Goebel R.  2006.  Solutions to hybrid inclusions via set and graphical convergence with stability theory applications. AUTOMATICA. 42:573-587.
Prieur C, Teel AR, Goebel R.  2009.  Smooth patchy control Lyapunov functions. AUTOMATICA. 45:675-683.
Teel AR, Cai C, Goebel R.  2008.  Smooth Lyapunov functions for hybrid systems part II: (Pre)asymptotically stable compact sets. IEEE TRANSACTIONS ON AUTOMATIC CONTROL. 53:734-748.
Teel AR, Cai C, Goebel R.  2007.  Smooth Lyapunov functions for hybrid systems - Part I: Existence is equivalent to robustness. IEEE TRANSACTIONS ON AUTOMATIC CONTROL. 52:1264-1277.
Petzold LR, Cao Y, Gillespie DT.  2005.  The slow-scale stochastic simulation algorithm. JOURNAL OF CHEMICAL PHYSICS. 122
Rycroft CH, Gibou F.  2012.  Simulations of a stretching bar using a plasticity model from the shear transformation zone theory. JOURNAL OF COMPUTATIONAL PHYSICS. 231:2155-2179.
Bamieh B, Gattami A.  2016.  Simple Covariance Approach to H-infinity Analysis. IEEE TRANSACTIONS ON AUTOMATIC CONTROL. 61:789-794.
Kosik KS, Piedrahita D, Hernandez I, Lopez-Tobon A, Obara B, Fedorov D, Davidson B, LaFerla F, Boudreau RL, Manjunath B.S et al..  2010.  Silencing of CDK5 Reduces Neurofibrillary Tangles in Transgenic Alzheimer's Mice. JOURNAL OF NEUROSCIENCE. 30:13966-13976.

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